Publications

Published

9. Bertagnolli A, Padilla CC, Bristow LA, Thamdrup B, Stewart FJ. Metabolic potential and in situ activity of marine Marinimicrobia bacteria in an anoxic water column. Environmental Microbiology. doi: 10.1111/1462-2920.13879. Link PDF

8. Garcia-Robledo E, Padilla CC, Aldunate M, Paulmier A, Gregori G, Stewart FJ, Ulloa O, Revsbech NP. 2017. Cryptic oxygen cycling in anoxic marine zones. Proceedings of the National Academy of Sciences of the USA. doi: 10.1073/pnas.1619844114. Link PDF

7. Mandric I, Knyazev S, Padilla CC, Stewart FJ, Māndoiu I, Zelikovsky A. Metabolic analysis of metatranscriptomic data from planktonic communities. 2017. Internal Symposium on Bioinformatics Research and Applications. 7:41. doi: 10.1007/978-3-319-59575-7_41. Link PDF

6. Vik DR, Roux S, Brum JR, Bolduc B, Emerson JB, Padilla CC, Stewart FJ, Sullivan MB. Putative Archaeal viruses from the mesopelagic environment. PeerJ. doi: 10.7717/peerj.3428. Open access

5. Stenegren M, Berg C, Padilla CC, David S, Montoya JP, Yager PL, Foster RA. 2017. Piecewise Structural Model (SEM) disentangles the environmental conditions favoring Diaton Diazotroph Associations (DDAs in the Western Tropical North Atlantic (WTNA). Frontiers in Microbiology. 8:810. doi: 10.3389/fmicb.2017.00810. Open access

4. Padilla CC, Bertagnolli AD, Bristow LA, Sarode N, Glass JB, Thamdrup B, Stewart FJ. 2017. Metagenomic binning recovers a transcriptionally active Gammaproteobacterium linking methanotrophy to partial denitrification in an anoxic oxygen minimum zone. Frontiers in Marine Science. 4:23. doi: 10.3389/fmars.2017.0023. Open access

3. Tsementzi D, Wu J, Deutsch S, Nath N, Rodriguez-R LM, Burns AS, Ranjan P, Sarode N, Malmstrom RR, Padilla CC, Stone BK, Bristow LA, Larsen M, Glass JB, Thamdrup B, Woyke T, Konstantinidis KT, Stewart FJ. 2016. SAR11 bacteria linked to ocean anoxia and nitrogen loss. Nature. 536:179-183. doi:10.1038/nature19068. Link PDF

2. Padilla CC, Bristow LA, Sarode N, Garcia-Robledo E, Gomez Ramirez E, Benson CR, Bourbonnais A, Altabet MA, Girguis PR, Thamdrup B, Stewart FJ. 2016. NC10 bacteria in marine oxygen minimum zones. ISMEJ. 10(8) 2067-2071. doi: 10.1038/ismej.2015.262. Link PDF

1. Padilla CC, Ganesh S, Gantt S, Huhman A, Parris DJ, Sarode N, Stewart FJ. 2015. Standard filtration practices may significantly distort planktonic microbial diversity estimates. Frontiers in Microbiology. 6:547. doi:

10.3389/fmcib.2015.00547. Open access

In Prep

8. Bristow LA, Thamdrup B, Padilla CC, Stewart FJ. Interactions of particle flux with N transformations in the tropical anoxic basin Golfo Dulce. In Preparation.

7. Bristow LA, Padilla CC, Sarode N, Stewart FJ, Thamdrup B. Slow growth and substrate kinetics of anammox in an oxygen minimum zone. In Preparation.

6. Padilla CC, Bertagnolli AD, Zhou K, Stewart FJ. Metagenomics reveals marine free-living microbial functional niche availability differences between the surface and deep-sea. In Preparation.

5. Ganesh S, Padilla CC, Bristow LA, Thamdrup B, Stewart FJ. Coupled single cell genomics and metatranscriptomics of Candidatus Scalindua sp. from a marine oxygen minimum zone. In Preparation

4. Padilla CC, Pratte ZA, Bertagnolli AD, Hall E, Dove A, Stewart FJ. Microbiome diversity and function in a sulfur-based denitrification towers in a public aquarium. In Preparation.

3. Bristow LA, Padilla CC, Thamdrup B, Stewart FJ. Microbial sources of nitrous oxide in a marine oxygen minimum zone. In Preparation.

2. Bristow LA, Padilla CC, Bourbonnais A, Altabet MA, Thamdrup B, Stewart FJ. Eddy driven effects on nitrogen loss in a marine oxygen minimum zone. In Preparation.

1. Kitzinger K, Padilla CC, Stewart FJ, Kuypers MMM, Bristow LA. Urea and cyanate driven ammonia oxidation in the Gulf of Mexico hypoxic zone. In Preparation